Projects using XGI#

XGI has been used in a variety of published work and other software. This is a list of projects that use XGI in substantive ways or use XGI-DATA. These are marked with [XGI] and [XGI-DATA], respectively.

Articles are listed by year and then alphabetically by the last name of the first author (and title if necessary).

Software Packages (8 total)#

  1. hoi

  1. hypercontagion

  1. hyperidpath

  1. hyperspec

  1. hypersync

  1. pynetflow

  1. segram

  1. simplicial-kuramoto

Published Work (35 total)#

2026#

  1. [XGI] Cosimo Agostinelli, Marco Mancastroppa, and Alain Barrat, “Higher-order dissimilarity measures for hypergraph comparison”, Journal of Complex Networks, Volume 14, Issue 1, cnaf048 (2026).

Paper Code

  1. [XGI-DATA] Antonio De Caro, Dario De Maio, Francesco Monzillo, Alessia Antelmi, and Biagio Cosenza, “Evaluating Portable Programming Models for Hypergraph Label Propagation on GPUs”, Proceedings of PDP 2026: 34th Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (2026).

Paper

  1. [XGI, XGI-DATA] Maxime Lucas, Luca Gallo, Arsham Ghavasieh, Federico Battiston, and Manlio De Domenico, “Functional reducibility of higher-order networks”, Nature Communications 17, 1551 (2026).

Paper Code

  1. [XGI] Alyssa Smith, Ilya Amburg, Sagar Kumar, Brooke Foucault Welles, and Nicholas W. Landry, “A Blue Start: A large-scale pairwise and higher-order social network dataset”, Scientific Data 13, 585 (2026).

Paper Code

2025#

  1. [XGI-DATA] Jordan Barrett, Paweł Prałat, Aaron Smith, and François Théberge, “Counting simplicial pairs in hypergraphs”, Proceedings of Complex Networks & Their Applications XIII, pp 77–88 (2025).

Paper

  1. [XGI] Dhrubajyoti Biswas and Soumyajit Seth, “Effect of higher-order interactions on aging transitions of coupled neurons”, Chaos, Solitons & Fractals, Volume 200, Part 1, 116977 (2025).

Paper

  1. [XGI, XGI-DATA] Martín Coll, Cliff A. Joslyn, Nicholas W. Landry, Quintino Francesco Lotito, Audun Myers, Joshua Pickard, Brenda Praggastis, and Przemysław Szufel, “HIF: The hypergraph interchange format for higher-order networks”, Network Science 13, e21 (2025).

Paper Code

  1. [XGI] Robin Delabays, Giulia De Pasquale, Florian Dörfler, and Yuanzhao Zhang, “Hypergraph reconstruction from dynamics”, Nature Communications 16, 2691 (2025).

Paper Code

  1. [XGI, XGI-DATA] Xie He, Philip S. Chodrow, and Peter J. Mucha, “Hypergraph Link Prediction via Hyperedge Copying”, Physical Review E 112, 024305 (2025).

Paper Code

  1. [XGI] Laurent Hébert-Dufresne, Nicholas W. Landry, Juniper Lovato, Jonathan St-Onge, Jean-Gabriel Young, Marie-Ève Couture-Ménard, Stéphane Bernatchez, Catherine Choquette, and Alan A. Cohen, “Governance as a complex, networked, democratic, satisfiability problem”, npj Complexity 2, 14 (2025).

Paper Code

  1. [XGI-DATA] Alec Kirkley, Helcio Felippe, and Federico Battiston, “Structural Reducibility of Hypergraphs”, Physical Review Letters 135, 247401 (2025).

Paper

  1. [XGI, XGI-DATA] Nicholas W. Landry and Laurent Hébert-Dufresne, “Group Science: The Open Source Study of Higher-order Networks With XGI”, SIAM News 58, 8 (2025).

Paper Code

  1. [XGI] Tianyu Li, Ying Xie, Zhiqiu Ye, Jiapei Zeng, Yingqi Liu, Lu Liu, and Ya Jia, “Analysis of synchronization transitions in higher-order Kuramoto oscillator system with different orders of phase lags”, , Chaos, Solitons & Fractals, Volume 199, Part 1, October 2025, 116749. (2025).

Paper

  1. [XGI, XGI-DATA] Federico Malizia, Andrés Guzmán, Iacopo Iacopini, and István Z. Kiss, “Disentangling the Role of Heterogeneity and Hyperedge Overlap in Explosive Contagion on Higher-Order Networks”, Physical Review Letters 135, 207401 (2025).

Paper Code

  1. [XGI-DATA] Marco Nurisso, Marta Morandini, Maxime Lucas, Francesco Vaccarino, Tommaso Gili, and Giovanni Petri, “Higher-order Laplacian renormalization”, Nature Physics (2025).

Paper Code

  1. [XGI] Thomas Robiglio, Matteo Neri, Davide Coppes, Cosimo Agostinelli, Federico Battiston, Maxime Lucas, and Giovanni Petri, “Synergistic Signatures of Group Mechanisms in Higher-Order Systems”, Physical Review Letters 134, 137401 (2025).

Paper

  1. [XGI] Yuyan Tong, Renhao Hong, Meng Li, Na Yang, Weihao Deng, Hui Tang, Tao Zeng, and Rui Liu, “Hi-C3: a statistical inference-based model for reconstructing higher-order cell–cell communication networks”, Briefings in Bioinformatics, Volume 26, Issue 5, bbaf568 (2025).

Paper

2024#

  1. [XGI] Sinan G. Aksoy, Ilya Amburg, and Stephen J. Young, “Scalable Tensor Methods for Nonuniform Hypergraphs”, SIAM Journal on Mathematics of Data Science, Vol. 6, Iss. 2, 481-503 (2024).

Paper Code

  1. [XGI] Gonzalo Contreras-Aso, Regino Criado, and Miguel Romance, “Beyond directed hypergraphs: heterogeneous hypergraphs and spectral centralities”, Journal of Complex Networks, Volume 12, Issue 4, cnae037 (2024).

Paper Code

  1. [XGI, XGI-DATA] Gonzalo Contreras-Aso, Cristian Pérez-Corral, and Miguel Romance, “Uplifting edges in higher order networks: spectral centralities for non-uniform hypergraphs”, AIMS Mathematics, Volume 9, Issue 11: 32045-32075 (2024).

Paper Code

  1. [XGI] Iacopo Iacopini, Márton Karsai, and Alain Barrat, “The temporal dynamics of group interactions in higher-order social networks”, Nature Communications 15, 7391 (2024).

Paper Code

  1. [XGI, XGI-DATA] Nicholas W. Landry, Ilya Amburg, Mirah Shi, and Sinan Aksoy, “Filtering higher-order datasets”, Journal of Physics: Complexity 5, 015006 (2024).

Paper Code

  1. [XGI] Nicholas W. Landry, William Thompson, Laurent Hébert-Dufresne, and Jean-Gabriel Young, “Reconstructing networks from simple and complex contagions”, Physical Review E 110, L042301 (2024).

Paper Code

  1. [XGI, XGI-DATA] Nicholas W. Landry, Jean-Gabriel Young, and Nicole Eikmeier, “The simpliciality of higher-order networks”, EPJ Data Science 13, 17 (2024).

Paper Code

  1. [XGI] Leonie Neuhäuser, Michael Scholkemper, Francesco Tudisco, and Michael T. Schaub, “Learning the effective order of a hypergraph dynamical system”, Science Advances 10, eadh4053 (2024).

Paper Code

  1. [XGI] Corbit R. Sampson and Juan G. Restrepo, “Competing Social Contagions with Opinion Dependent Infectivity”, Physical Review E 111, 024313 (2024).

Paper

  1. [XGI-DATA] Guillaume St-Onge, Laurent Hébert-Dufresne, and Antoine Allard, “Nonlinear bias toward complex contagion in uncertain transmission settings”, PNAS 121 (1) e2312202121 (2024).

Paper Code

  1. [XGI-DATA] Junjie Zhang, Caixia Liu, Shuxin Liu, Yahui Wang, Jie Li, and Weifei Zang, “Robustness of higher-order interdependent networks with reinforced nodes”, Chaos 34, 083138 (2024).

Paper

  1. [XGI] Yuanzhao Zhang, Per Sebastian Skardal, Federico Battiston, Giovanni Petri, and Maxime Lucas, “Deeper but smaller: Higher-order interactions increase linear stability but shrink basins”, Science Advances 10,eado8049 (2024).

Paper Code

2023#

  1. [XGI] Gonzalo Contreras-Aso, Regino Criado, Guillermo Vera de Salas, and Jinling Yang, “Detecting communities in higher-order networks by using their derivative graphs”, Chaos, Solitons, and Fractals 177, 114200 (2023).

Paper Code

  1. [XGI] Timothy LaRock and Renaud Lambiotte, “Encapsulation Structure and Dynamics in Hypergraphs”, Journal of Physics: Complexity 4, 045007 (2023).

Paper Code

  1. [XGI] Nicholas W. Landry and Juan Restrepo, “Opinion disparity in hypergraphs with community structure”, Physical Review E 108, 034311 (2023).

Paper Code

  1. [XGI] Marco Mancastroppa, Iacopo Iacopini, Giovanni Petri, and Alain Barrat, “Hyper-cores promote localization and efficient seeding in higher-order processes”, Nature Communications 14, 6223 (2023).

Paper Code

  1. [XGI] Nicolò Ruggieri, Martina Contisciani, Federico Battiston, and Caterina de Bacco, “Community detection in large hypergraphs”, Science Advances 9, eadg9159 (2023).

Paper Code

  1. [XGI] Yuanzhao Zhang, Maxime Lucas, and Federico Battiston, “Higher-order interactions shape collective dynamics differently in hypergraphs and simplicial complexes”, Nature Communications 14, 1605 (2023).

Paper Code

Preprints (9 total)#

2026#

  1. [XGI] Kun Cao, Guangzu Bai, and Li Li, “Identifying Disruptive Technologies via Dynamic Hypergraph Modeling and Large Language Models”, TechRxiv (2026).

Paper

  1. [XGI-DATA] Hugo P. Maia, Guilherme Ferraz de Arruda, Silvio C. Ferreira, and Yamir Moreno, “Nesting Controls Phase Transitions in Higher-Order Contagion”, arXiv:2604.23337 (2026).

Paper

  1. [XGI] Emma Zajdela and Nicholas W. Landry, “Higher-order interactions at scientific conferences influence team formation”, arXiv:2603.02571 (2026).

Paper Code

2025#

  1. [XGI-DATA] Margherita Bertè and Tommaso Gili, “Fibration Symmetries and Cluster Synchronization in Multi-Body Systems”, arXiv:2510.11207 (2025).

Paper Code

  1. [XGI-DATA] Cameron Ibrahim, S M Ferdous, Ilya Safro, Marco Minutoli, and Mahantesh Halappanavar, “ELRUHNA: Elimination Rule-based Hypergraph Alignment”, arXiv:2506.09866 (2025).

Paper

  1. [XGI] Leah A. Keating, Kwang-Il Goh, and Mason A. Porter, “An Approximate-Master-Equation Formulation of the Watts Threshold Model on Hypergraphs”, arXiv:2503.04020 (2025).

Paper Code

  1. [XGI] Timothy LaRock and Renaud Lambiotte, “Exploring the Non-uniqueness of Node Co-occurrence Matrices of Hypergraphs”, arXiv:2506.01479 (2025).

Paper Code

  1. [XGI, XGI-DATA] Hugo P. Maia, Wesley Cota, Yamir Moreno, and Silvio C. Ferreira, “Efficient Gillespie algorithms for spreading phenomena in large and heterogeneous higher-order networks”, arXiv:2509.20174 (2025).

Paper Code

2024#

  1. [XGI] Gülşah Akçakır, Amina Azaiez, Alberto Ceria, Clara Eminente, Guglielmo Ferranti, Govind Gandhi, Aishvarya Raj, and Iacopo Iacopini, “Exploring the interplay of individual traits and interaction dynamics in preschool social networks”, arXiv:2407.12728 (2024).

Paper

Theses (6 total)#

2025#

  1. [XGI] Corbit Sampson, “Complex Social Systems: Emergent Phenomena, Social Contagions, and Opinion Consensus”, The University of Colorado at Boulder (2025).

Thesis

2024#

  1. [XGI, XGI-DATA] Xie He, “Methods, Analyses, and Applications of Multilayer Temporal Link Prediction in Networks”, Dartmouth College (2024).

Thesis

  1. [XGI, XGI-DATA] Yifei (Bell) Luo, “Efficient sampling of configuration model random hypergraphs”, Middlebury College (2024).

Thesis

2023#

  1. [XGI] Leonie Neuhäuser, “Modelling the effect of groups on network structure and dynamics”, RWTH Aachen University (2023).

Thesis

  1. [XGI] Thomas Robiglio, “Higher-order structures in face-to-face interaction networks”, Politecnico di Torino (2023).

Thesis

2022#

  1. [XGI, XGI-DATA] Nicholas W. Landry, “Contagion on Complex Systems: Structure and Dynamics”, The University of Colorado at Boulder (2022).

Thesis